Evidence types

Basic Science

Basic science articles covering early-stage IBD research, disease mechanisms, lab findings, microbiome work, genetics, and experimental models.

Page 3 of 15 · 708 articles

The zc3h6 deficiency causes gut microbiota dysbiosis and inflammatory bowel disease-like symptoms in zebrafish.
Journal of genetics and genomics = Yi chuan xue bao

The zc3h6 deficiency causes gut microbiota dysbiosis and inflammatory bowel disease-like symptoms in zebrafish.

Based on the title and source metadata, this appears to be a basic science related to Inflammatory bowel disease, Microbiome, and Research and clinical trials. The original article is from Journal of genetics and...

Read Summary
Role of AI in Accurate and Disinformation‐Resilient Diagnosis of Ulcerative Colitis
Disinformation Security for Generative AI Applications

Role of AI in Accurate and Disinformation‐Resilient Diagnosis of Ulcerative Colitis

Based on the title and source metadata, this appears to be a basic science related to Ulcerative colitis, Inflammatory bowel disease, and Research and clinical trials. The original article is from Disinformation Security...

Read Summary
Lactiplantibacillus plantarum HYY-DB36 alleviated dextran sulfate sodium (DSS)-induced ulcerative colitis through regulation of intestinal flora
Journal of Food Science and Technology

Lactiplantibacillus plantarum HYY-DB36 alleviated dextran sulfate sodium (DSS)-induced ulcerative colitis through regulation of intestinal flora

Based on the title and source metadata, this appears to be a basic science related to Ulcerative colitis, Inflammatory bowel disease, and Research and clinical trials. The original article is from Journal of Food Science...

Read Summary
Specialized macrophages link gut lymphoid follicles to Crohn’s disease granulomas
Springer Science and Business Media LLC

Specialized macrophages link gut lymphoid follicles to Crohn’s disease granulomas

The study helps explain how granulomas—linked to more severe Crohn’s disease—might form by repurposing lymphoid follicle macrophages, pointing to cellular programs and signals that could be relevant for future biomarkers...

Read Summary
Kaempferol-3-O-glucorhamnoside alleviates DSS-induced ulcerative colitis via the arginine-polyamine metabolism pathway.
International immunopharmacology

Kaempferol-3-O-glucorhamnoside alleviates DSS-induced ulcerative colitis via the arginine-polyamine metabolism pathway.

Researchers exploring new anti-inflammatory or metabolism-targeting approaches for UC might view KA as a candidate molecule that modulates arginine–polyamine metabolism, which could point to new drug-discovery...

Read Summary
New Perspectives on STAT3 in Ulcerative Colitis: Molecular Mechanisms and Dual Roles.
Cellular and molecular gastroenterology and hepatology

New Perspectives on STAT3 in Ulcerative Colitis: Molecular Mechanisms and Dual Roles.

STAT3 is a central immune signaling molecule implicated in ulcerative colitis; understanding its dual roles could influence future biomarker research and therapies for UC. The review highlights why STAT3’s...

Read Summary
Integrative Transcriptomic and Genetic Analysis Prioritizes IRF1 as a Candidate Regulatory Gene Associated with Ulcerative Colitis
Journal of inflammation research

Integrative Transcriptomic and Genetic Analysis Prioritizes IRF1 as a Candidate Regulatory Gene Associated with Ulcerative Colitis

Based on the title and source metadata, this appears to be a basic science related to Ulcerative colitis, Inflammatory bowel disease, and Research and clinical trials. The original article is from Journal of inflammation...

Read Summary
An HOCl-responsive chemiluminescent probe for monitoring MPO-mediated HOCl generation for deep-tissue tracking and evaluation of inflammatory bowel disease.
Journal of materials chemistry. B

An HOCl-responsive chemiluminescent probe for monitoring MPO-mediated HOCl generation for deep-tissue tracking and evaluation of inflammatory bowel disease.

A new chemiluminescent probe could help researchers see and measure MPO-driven HOCl inflammation deeper in tissues, which may speed preclinical testing of IBD therapies and biomarker development.

Read Summary
Tegoprazan regulates gut microbiota structure in Helicobacter pylori-induced ulcerative colitis mice
Folia Microbiologica

Tegoprazan regulates gut microbiota structure in Helicobacter pylori-induced ulcerative colitis mice

Based on the title and source metadata, this appears to be a basic science related to Ulcerative colitis, Inflammatory bowel disease, and Microbiome. The original article is from Folia Microbiologica.

Read Summary
Titanium dioxide exposure during gestation is critical to worsen DSS-induced colitis
Springer Science and Business Media LLC

Titanium dioxide exposure during gestation is critical to worsen DSS-induced colitis

If findings translate beyond mice, exposure to titanium dioxide during pregnancy could influence offspring gut barrier, microbiota, and susceptibility to inflammatory colitis — a potential public-health concern for...

Read Summary
Integrative Transcriptomic and Single-Cell Analyses Identify S100A8 as a Link Between Myeloid Inflammation and Mitophagy Dysregulation in Crohn’s Disease
Europe PMC

Integrative Transcriptomic and Single-Cell Analyses Identify S100A8 as a Link Between Myeloid Inflammation and Mitophagy Dysregulation in Crohn’s Disease

The paper points to S100A8 as a potential link between immune-cell-driven inflammation and mitochondrial stress in Crohn’s disease, which could help researchers explore new biomarkers or targets for study.

Read Summary
Identification of Autophagy-Related Biomarkers for Subtyping and Immune Microenvironment Remodeling in Ulcerative Colitis
Springer Science and Business Media LLC

Identification of Autophagy-Related Biomarkers for Subtyping and Immune Microenvironment Remodeling in Ulcerative Colitis

This study proposes three autophagy-related genes (APOL1, CCL2, IL24) as potential biomarkers that may help classify ulcerative colitis patients into subtypes with different immune environments, which could eventually...

Read Summary
Mesaconic acid delivery via biomaterials and engineered probiotics to the gut reduces inflammation in Crohn's Diseases mouse models
bioRxiv

Mesaconic acid delivery via biomaterials and engineered probiotics to the gut reduces inflammation in Crohn's Diseases mouse models

This preclinical study suggests raising mesaconate in the gut can reduce inflammation in mouse models of Crohn’s disease, using either an engineered probiotic or a zinc–mesaconate formulation—approaches that could...

Read Summary
Multi‐omics and machine learning identify neutrophil annexin A3 as a therapeutic target of ginsenoside Rb1 for comorbidity of ischaemic stroke and ulcerative colitis
British Journal of Pharmacology

Multi‐omics and machine learning identify neutrophil annexin A3 as a therapeutic target of ginsenoside Rb1 for comorbidity of ischaemic stroke and ulcerative colitis

This study links a neutrophil protein (ANXA3) to both ulcerative colitis and ischaemic stroke and suggests a compound (ginsenoside Rb1) can bind ANXA3 and reduce neutrophil hyperactivation in lab tests — a potential...

Read Summary
Disease- and Region-Specific Molecular Patterns Involving miRNAs and Associated Signalling Pathways and Epithelial Cell-Fate Responses in PSC-Associated Ulcerative Colitis
Cells

Disease- and Region-Specific Molecular Patterns Involving miRNAs and Associated Signalling Pathways and Epithelial Cell-Fate Responses in PSC-Associated Ulcerative Colitis

The work highlights molecular differences between PSC-UC and typical UC that could help explain higher colorectal cancer risk in PSC-UC and suggests candidate miRNA biomarkers (eg, miR-155) for further study.

Read Summary
Engineering extracellular vesicles for inflammatory bowel disease and colitis-associated colorectal cancer: from therapeutic innovation to clinical translation
Frontiers in Immunology

Engineering extracellular vesicles for inflammatory bowel disease and colitis-associated colorectal cancer: from therapeutic innovation to clinical translation

Engineered extracellular vesicles are an emerging, targeted therapy approach that could someday improve immune control, mucosal healing, and drug delivery in IBD and reduce colitis-associated cancer risk. The review...

Read Summary
Omnidirectional Interaction Networks Modulating Phenotypic Plasticity in the Gut Microbiota Towards Ulcerative Colitis
Advanced Science

Omnidirectional Interaction Networks Modulating Phenotypic Plasticity in the Gut Microbiota Towards Ulcerative Colitis

The paper suggests that changes in how microbes interact (community plasticity and network structure) may underlie microbiome differences seen in ulcerative colitis and could point toward ecology-informed biomarkers or...

Read Summary
Menispermum dauricum rhizome alkaloids ameliorate colitis by inhibiting mitochondrial DNA synthesis via the JAK2-STAT4-AK4 pathway.
Journal of ethnopharmacology

Menispermum dauricum rhizome alkaloids ameliorate colitis by inhibiting mitochondrial DNA synthesis via the JAK2-STAT4-AK4 pathway.

This study identifies a new molecular pathway (JAK2–STAT4–AK4–mtDNA) linked to inflammatory macrophage activity in experimental colitis and presents a plant-derived alkaloid mixture (TAMR) that modulates that pathway....

Read Summary
Multi-cohort meta-analysis, single-cell and Mendelian randomization analyses with experimental validation identify RHBDF2 as a shared mediator of ulcerative colitis and blood–brain barrier disruption
Frontiers in Synaptic Neuroscience

Multi-cohort meta-analysis, single-cell and Mendelian randomization analyses with experimental validation identify RHBDF2 as a shared mediator of ulcerative colitis and blood–brain barrier disruption

The paper suggests a molecular link (RHBDF2–ADAM17–TNFα) between ulcerative colitis and blood–brain barrier disruption, which could explain some neurological comorbidities of UC and identify targets for future therapies.

Read Summary
Barrier-reinforcing hyaluronic acid-bilirubin nanodelivery of methylprednisolone for synergistic modulation of the intestinal barrier, immune system, and gut microbiome in colitis.
Journal of controlled release : official journal of the Controlled Release Society

Barrier-reinforcing hyaluronic acid-bilirubin nanodelivery of methylprednisolone for synergistic modulation of the intestinal barrier, immune system, and gut microbiome in colitis.

Researchers are exploring ways to deliver steroids to the inflamed gut while lowering systemic side effects; a nanoparticle carrier that protects the epithelium and concentrates drug in the colon could, if translated,...

Read Summary
Spleen-targeted ultrasound restores gut-brain homeostasis in colitis via vagal neuroimmune modulation.
Brain, behavior, and immunity

Spleen-targeted ultrasound restores gut-brain homeostasis in colitis via vagal neuroimmune modulation.

The study suggests a noninvasive spleen-targeted ultrasound approach can reduce gut and brain inflammation and improve behavior in a mouse colitis model, mediated by vagal signaling—pointing to a possible new avenue for...

Read Summary
+ Metabolic reprogramming of pathogenic CD4T helper cells attenuates inflammatory bowel disease in mice.
Science signaling

+ Metabolic reprogramming of pathogenic CD4T helper cells attenuates inflammatory bowel disease in mice.

The study links T cell metabolism and epigenetics to inflammation in IBD, highlighting GSK3β as a possible drug target. That could guide future therapies aimed at dampening pathogenic T cells in Crohn’s disease.

Read Summary
ACSS2-dependent histone lactylation amplifies ferroptotic injury via a metabolic feedback loop in ulcerative colitis
Genome Medicine

ACSS2-dependent histone lactylation amplifies ferroptotic injury via a metabolic feedback loop in ulcerative colitis

Based on the title and source metadata, this appears to be a basic science related to Ulcerative colitis, Inflammatory bowel disease, and Research and clinical trials. The original article is from Genome Medicine.

Read Summary
Mechanistic insights into sitagliptin’s action in rat inflammatory bowel disease: involvement of the NO-cGMP-KATP pathway
Research in pharmaceutical sciences

Mechanistic insights into sitagliptin’s action in rat inflammatory bowel disease: involvement of the NO-cGMP-KATP pathway

Based on the title and source metadata, this appears to be a basic science related to Inflammatory bowel disease and Research and clinical trials. The original article is from Research in pharmaceutical sciences.

Read Summary
Acetylation–ubiquitination crosstalk in NLRP3–gasdermin pyroptosis: a substrate-state framework with relevance to ulcerative colitis
Frontiers in Immunology

Acetylation–ubiquitination crosstalk in NLRP3–gasdermin pyroptosis: a substrate-state framework with relevance to ulcerative colitis

The molecular interaction between acetylation and ubiquitination on NLRP3 and GSDMD could help explain mechanisms of inflammatory cell death relevant to UC and point to new biomarker or therapeutic targets, but direct...

Read Summary
A protein-prioritised, colocalisation-informed genetic framework for safety hypothesis generation across inflammatory bowel disease therapeutic pathways
Journal of Translational Medicine

A protein-prioritised, colocalisation-informed genetic framework for safety hypothesis generation across inflammatory bowel disease therapeutic pathways

Based on the title and source metadata, this appears to be a basic science related to Inflammatory bowel disease and Research and clinical trials. The original article is from Journal of Translational Medicine.

Read Summary
Ameliorative Effects of the White Jade Snail Secretion on DSS-Induced Ulcerative Colitis in Mice
Current Issues in Molecular Biology

Ameliorative Effects of the White Jade Snail Secretion on DSS-Induced Ulcerative Colitis in Mice

Preclinical work identifies a natural-product mixture that reduced inflammation, improved gut barrier markers, and changed the microbiome in a mouse model of ulcerative colitis. This could be an early step toward new...

Read Summary
GART expression is associated with a proliferative and purine-metabolic ISC-like epithelial state in ulcerative colitis
Frontiers in Immunology

GART expression is associated with a proliferative and purine-metabolic ISC-like epithelial state in ulcerative colitis

The study identifies a molecular epithelial program (GART-associated) linked to proliferation and purine metabolism in ulcerative colitis, which could inform future mechanistic research and biomarker development relevant...

Read Summary
Forsythiae Fructus polysaccharides mitigate DSS colitis by modulating gut microbiota-derived palmitic acid and PI3K/AKT pathway.
International journal of biological macromolecules

Forsythiae Fructus polysaccharides mitigate DSS colitis by modulating gut microbiota-derived palmitic acid and PI3K/AKT pathway.

The study suggests a new microbiota–metabolite–immune pathway (palmitic acid → PI3K/AKT → NETs) that may drive colitis and that Forsythia polysaccharides can modify, which could point to future microbiota-targeted...

Read Summary
Colon-targeted delivery of α-terpineol via ZIF-8 alleviates ulcerative colitis by anti-inflammatory and gut microbiota-metabolism modulation.
International journal of pharmaceutics

Colon-targeted delivery of α-terpineol via ZIF-8 alleviates ulcerative colitis by anti-inflammatory and gut microbiota-metabolism modulation.

The paper describes a novel colon-targeted delivery system that improved local drug retention, reduced dosing frequency, and changed microbiota and metabolic markers in a mouse model of UC — developments that could...

Read Summary
Oral delivery of recombinant Lactococcus lactis expressing an IL-23 inhibitor as a potential therapeutic strategy for experimental colitis
Drug Delivery

Oral delivery of recombinant Lactococcus lactis expressing an IL-23 inhibitor as a potential therapeutic strategy for experimental colitis

The study explores a novel, non-invasive way to deliver an IL-23–blocking protein to the gut using engineered Lactococcus lactis, which could eventually offer an alternative to systemic biologics for controlling...

Read Summary
An Oral Nanozyme Microsupplement Converts Pathological ROS Into a Colon‐Adhesive Shield for Long‐Term Neutrophil‐Directed Remission of Ulcerative Colitis
Advanced Materials

An Oral Nanozyme Microsupplement Converts Pathological ROS Into a Colon‐Adhesive Shield for Long‐Term Neutrophil‐Directed Remission of Ulcerative Colitis

The study describes a new nanozyme-based oral formulation that reduced NET formation and improved mucosal healing in a mouse model of ulcerative colitis, suggesting a novel preclinical approach to long‑term...

Read Summary
Lactococcus lactis Oral delivery of recombinantexpressing an IL-23 inhibitor as a potential therapeutic strategy for experimental colitis.
Drug delivery

Lactococcus lactis Oral delivery of recombinantexpressing an IL-23 inhibitor as a potential therapeutic strategy for experimental colitis.

This study explores a novel, non-invasive way to block IL-23 — an important inflammatory driver in IBD — by orally delivering small IL-23 inhibitors using engineered Lactococcus lactis in mouse colitis models.

Read Summary
In which intestinal cells does the genetic risk for Crohn's disease appear? — Analysis of 178,030 cells from 39 individuals
note.com

In which intestinal cells does the genetic risk for Crohn's disease appear? — Analysis of 178,030 cells from 39 individuals

Links between GWAS risk loci and the specific cell types where those loci may act can focus laboratory experiments and eventually help identify causal genes or pathways relevant to Crohn’s disease.

Read Summary
Palmitoylation reprograms the intestinal mucosal barrier microenvironment: potential mechanisms and promising therapeutic targets.
Frontiers in pharmacology

Palmitoylation reprograms the intestinal mucosal barrier microenvironment: potential mechanisms and promising therapeutic targets.

The review identifies a novel molecular mechanism (S-palmitoylation) that may drive barrier dysfunction and intestinal inflammation in IBD, suggesting new non-immunosuppressive therapeutic targets that could eventually...

Read Summary
Design and Evaluation of Colon-Specific Epinastine Prodrugs as Potent Anti-Colitis Agents Acting via the Activation of the Nrf2−HO-1 Pathway
Molecular Pharmaceutics

Design and Evaluation of Colon-Specific Epinastine Prodrugs as Potent Anti-Colitis Agents Acting via the Activation of the Nrf2−HO-1 Pathway

The study presents a preclinical strategy to concentrate an existing antihistamine drug in the colon and reduce systemic exposure, which could improve local efficacy and safety for IBD treatment if later validated in...

Read Summary
Polysaccharides from Radix Hedysari exhibited preventive effects against DSS-induced ulcerative colitis in C57BL/6 mice
Frontiers in Immunology

Polysaccharides from Radix Hedysari exhibited preventive effects against DSS-induced ulcerative colitis in C57BL/6 mice

Researchers report that a polysaccharide from Radix Hedysari reduced inflammation, improved barrier proteins, and shifted gut bacteria in a mouse model of ulcerative colitis — suggesting a potential preventive candidate...

Read Summary
Grapefruit-derived nanovesicles: a promising nanoplatform for enhancing the therapeutic efficacy of andrographolide against ulcerative colitis.
Bioorganic chemistry

Grapefruit-derived nanovesicles: a promising nanoplatform for enhancing the therapeutic efficacy of andrographolide against ulcerative colitis.

Researchers are developing oral delivery methods to make promising anti‑inflammatory compounds more effective. If such platforms translate to humans, they could expand treatment options for UC by improving absorption of...

Read Summary
Integrated Metagenomic and Host Transcriptomic Profiling Reveals Microbial Enzyme-Driven Immunometabolic Remodeling in Ulcerative Colitis: A Multi-Omics Bioinformatics Analysis
Enzyme and Microbial Technology

Integrated Metagenomic and Host Transcriptomic Profiling Reveals Microbial Enzyme-Driven Immunometabolic Remodeling in Ulcerative Colitis: A Multi-Omics Bioinformatics Analysis

Based on the title and source metadata, this appears to be a basic science related to Ulcerative colitis, Inflammatory bowel disease, and Research and clinical trials. The original article is from Enzyme and Microbial...

Read Summary
Limosilactobacillus reuteri Z-621 isolated from Hu lambs alleviates colitis by restoring intestinal barrier homeostasis and modulating the gut microbiota composition and lipid metabolism
Animal Microbiome

Limosilactobacillus reuteri Z-621 isolated from Hu lambs alleviates colitis by restoring intestinal barrier homeostasis and modulating the gut microbiota composition and lipid metabolism

The paper identifies a specific probiotic strain that reduced colitis signs and improved intestinal barrier function in a mouse model, supporting further preclinical and translational work toward microbiome-based...

Read Summary
IXSH-FD: integrated XGBoost-SHAP hybrid framework for SNP feature discovery
BMC Bioinformatics

IXSH-FD: integrated XGBoost-SHAP hybrid framework for SNP feature discovery

The study proposes a machine learning approach to identify SNPs linked to Crohn’s disease risk, which could help researchers prioritize genetic variants for further study and, eventually, contribute to risk prediction or...

Read Summary
Integrated transcriptome and single-cell RNA sequencing identifies transient receptor potential channel-related biomarkers in ulcerative colitis
Frontiers in Molecular Biosciences

Integrated transcriptome and single-cell RNA sequencing identifies transient receptor potential channel-related biomarkers in ulcerative colitis

New biomarkers and cell-type insights could help future diagnostic tools or targeted therapies in UC by pointing to TRP channel–related genes and B/plasma cell involvement.

Read Summary