Research topics

Microbiome

Microbiome articles covering gut bacteria, microbial changes, microbiota research, and IBD disease mechanisms.

Page 1 of 6 · 283 articles

Structural elucidation and structure-activity relationship of Porphyra haitanensis polysaccharide for preventing ulcerative colitis: Targeting the immune-microbiota-metabolism axis.
International journal of biological macromolecules

Structural elucidation and structure-activity relationship of Porphyra haitanensis polysaccharide for preventing ulcerative colitis: Targeting the immune-microbiota-metabolism axis.

The study suggests a natural seaweed-derived polysaccharide could modify gut bacteria and immune signaling in ways that reduced experimental colitis, which may interest people looking for microbiota-targeted dietary...

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MAAMOUL: metabolic network-based discovery of microbiome-metabolome shifts in disease.
Bioinformatics (Oxford, England)

MAAMOUL: metabolic network-based discovery of microbiome-metabolome shifts in disease.

This method helps translate complex paired microbiome and metabolome data into coherent functional modules; that could clarify microbial metabolic alterations in IBD or IBS and guide future biomarker or mechanistic...

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2'-Fucosyllactose modulates gut microbiota and systemic metabolism in mild-to-moderate ulcerative colitis: a randomized crossover trial.
Journal of Crohn's & colitis

2'-Fucosyllactose modulates gut microbiota and systemic metabolism in mild-to-moderate ulcerative colitis: a randomized crossover trial.

The study suggests a dietary/prebiotic compound (2'-FL) can change gut microbes and patient-reported disease control in mild-to-moderate UC, which could point to non-drug ways to support symptoms and microbiome health.

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Microbiota-derived 4-HPAA alleviates Crohn's disease by stabilizing SIRT1 and reprogramming macrophage immunometabolism.
Apoptosis : an international journal on programmed cell death

Microbiota-derived 4-HPAA alleviates Crohn's disease by stabilizing SIRT1 and reprogramming macrophage immunometabolism.

The study links a polyphenol-rich diet to a specific microbiome change and a microbial metabolite (4-HPAA) that reduced inflammation in mouse models — offering a possible mechanism by which diet could influence Crohn's...

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An orally administered peptide hydrogel disentangles immune-microbiota crosstalk for long-term ulcerative colitis therapy
openRxiv

An orally administered peptide hydrogel disentangles immune-microbiota crosstalk for long-term ulcerative colitis therapy

This study describes a new oral peptide hydrogel that, in mouse models, appears to reduce colitis severity by acting on both immune signaling (TLR4) and the gut microbiome. For people with UC, treatments that target both...

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Longitudinal visceral adipose heterogeneity supports digital health stratification of infliximab response loss in Crohn disease
Springer Science and Business Media LLC

Longitudinal visceral adipose heterogeneity supports digital health stratification of infliximab response loss in Crohn disease

If validated, an imaging-derived adipose heterogeneity biomarker could help predict who will lose response to infliximab after induction, potentially guiding earlier treatment decisions and personalized monitoring for...

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Microbiota-Immune Interaction Landscape of Treg/Th17 Dynamic Balance in Regulating Mucosal Immune Homeostasis: From Molecular Switches to Precision Intervention in Inflammatory Bowel Disease
Discovery Medicine

Microbiota-Immune Interaction Landscape of Treg/Th17 Dynamic Balance in Regulating Mucosal Immune Homeostasis: From Molecular Switches to Precision Intervention in Inflammatory Bowel Disease

Treg/Th17 balance is a central immune mechanism implicated in IBD pathogenesis; understanding how microbes, metabolites, and tissue context control that balance could inform new biomarkers and targeted therapies.

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Polysaccharide-based colon targeting drug delivery systems: Overview on challenges, opportunities and prospects
International Journal of Polymeric Materials

Polysaccharide-based colon targeting drug delivery systems: Overview on challenges, opportunities and prospects

Colon-targeted delivery systems aim to concentrate drugs in the colon, which could improve effectiveness and reduce systemic side effects for IBD and colorectal cancer treatments. Understanding these approaches helps...

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Pesticide Residues, Gut Microbiota, and Gastrointestinal Outcomes: A Scoping Review of Human Evidence
Comprehensive Reviews in Food Science and Food Safety

Pesticide Residues, Gut Microbiota, and Gastrointestinal Outcomes: A Scoping Review of Human Evidence

This review summarizes human evidence that pesticides in the diet could affect the gut microbiome and may be linked to gastrointestinal outcomes including IBD; strongest consistent signals were for organochlorine...

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Microbiota-derived 4-HPAA alleviates Crohn’s disease by stabilizing SIRT1 and reprogramming macrophage immunometabolism
Apoptosis

Microbiota-derived 4-HPAA alleviates Crohn’s disease by stabilizing SIRT1 and reprogramming macrophage immunometabolism

The study identifies a gut bacterial metabolite that appears to reduce intestinal inflammation through SIRT1 stabilization and macrophage metabolic reprogramming — a potential new biological pathway relevant to Crohn’s...

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A dual-crosslinked herbal hydrogel for multimodal therapy of ulcerative colitis via IL-34/IL-22 modulation
Journal of Nanobiotechnology

A dual-crosslinked herbal hydrogel for multimodal therapy of ulcerative colitis via IL-34/IL-22 modulation

This study reports a new herbal hydrogel designed to repair the intestinal barrier, shift gut microbes, and modulate immune signals (IL-22/IL-34) in preclinical models of ulcerative colitis—ideas that could inform future...

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Shengjiang San modification promotes colonic mucosal repair in ulcerative colitis rats by inhibiting lauric acid-Shigella synergistic damage via PKC signaling pathway.
American journal of translational research

Shengjiang San modification promotes colonic mucosal repair in ulcerative colitis rats by inhibiting lauric acid-Shigella synergistic damage via PKC signaling pathway.

The paper identifies a potential microbiome–metabolite–PKC pathway by which an herbal formula reduced colonic injury in a rat model of UC; this could point to new targets for research into mucosal repair and...

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The potential connection between inflammatory bowel disease and Alzheimer's disease: mechanistic insights and therapeutic implications.
Frontiers in immunology

The potential connection between inflammatory bowel disease and Alzheimer's disease: mechanistic insights and therapeutic implications.

People with IBD may be interested because the review summarizes biological pathways that could link gut inflammation to brain changes seen in Alzheimer’s disease, suggesting possible shared mechanisms and future research...

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A natural pectic polysaccharide from rhubarb reprograms dysbiotic gut microbiota and resolves mucosal inflammation in ulcerative colitis.
Phytomedicine : international journal of phytotherapy and phytopharmacology

A natural pectic polysaccharide from rhubarb reprograms dysbiotic gut microbiota and resolves mucosal inflammation in ulcerative colitis.

People with ulcerative colitis may be interested because the study describes a natural compound that reduced inflammation and disease signs in a mouse model and acted through the gut microbiota and immune pathways —...

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NAD+ metabolism influences TGF-β–associated transcriptional programs and the gut microbiota in murine models of colitis
Biochemistry and Biophysics Reports

NAD+ metabolism influences TGF-β–associated transcriptional programs and the gut microbiota in murine models of colitis

The study links NAD+ precursor (NMN) supplementation to changes in TGF-β–associated gene programs, intestinal immune signatures, and the gut microbiome in mouse colitis models — pathways relevant to fibrosis and...

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Adjunctive nutraceutical strategies in ulcerative colitis: From molecular pathways to clinical outcomes.
Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie

Adjunctive nutraceutical strategies in ulcerative colitis: From molecular pathways to clinical outcomes.

People with UC often look for dietary supplements or ‘‘natural’’ add-ons. This review explains which nutraceutical approaches have the most and least clinical support, helping patients and clinicians weigh potential...

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Single-cell transcriptomic analysis reveals that Trametes robiniophila Murr. (Huaier) granules protect against ulcerative colitis by targeting macrophage-associated cGAS-STING signaling.
Journal of ethnopharmacology

Single-cell transcriptomic analysis reveals that Trametes robiniophila Murr. (Huaier) granules protect against ulcerative colitis by targeting macrophage-associated cGAS-STING signaling.

The study describes a mechanism by which Huaier granules reduced colitis-related inflammation in mice and cell models by targeting macrophage cGAS–STING signaling and altering the gut microbiome—information that could...

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A comparative evaluation of new prebiotic candidates. Part 2: In vitro assays using faecal inoculum from IBD patients.
Food research international (Ottawa, Ont.)

A comparative evaluation of new prebiotic candidates. Part 2: In vitro assays using faecal inoculum from IBD patients.

Prebiotics change how gut microbes ferment carbohydrates and produce metabolites that can affect gut health. For people with IBD, a prebiotic that is well fermented by their microbiota, increases beneficial bacteria and...

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Structural characterization of an α-glucan from Dendrobium officinale and its gut microbiota-dependent protective effects against DSS-induced ulcerative colitis in mice.
Food research international (Ottawa, Ont.)

Structural characterization of an α-glucan from Dendrobium officinale and its gut microbiota-dependent protective effects against DSS-induced ulcerative colitis in mice.

The work highlights a dietary polysaccharide that reduced inflammation and improved mucosal barrier function in a mouse colitis model through gut-microbiota changes — a mechanism relevant to IBD research and potential...

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Self-Propelling WO3 Nanomotors Restore the Gut-Kidney Axis by Modulating Intestinal Homeostasis in Inflammatory Bowel Disease.
Advanced healthcare materials

Self-Propelling WO3 Nanomotors Restore the Gut-Kidney Axis by Modulating Intestinal Homeostasis in Inflammatory Bowel Disease.

The study presents a novel nanomaterial approach that aims to protect both inflamed intestines and kidneys by restoring intestinal barrier function and microbiome balance—mechanisms relevant to IBD-related systemic...

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Microbial and functional shifts between flare and remission in a single-center cohort of children with inflammatory bowel disease.
World journal of clinical pediatrics

Microbial and functional shifts between flare and remission in a single-center cohort of children with inflammatory bowel disease.

The study links changes in gut microbes and microbial functions with disease activity in children with IBD, suggesting the microbiome may play a role in recovery and could be a target to help sustain remission.

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Inflammatory bowel disease treatment: Mechanisms to clinical translation (Review).
International journal of molecular medicine

Inflammatory bowel disease treatment: Mechanisms to clinical translation (Review).

The article reviews current and emerging IBD treatments and the biological reasons they may work — useful for patients wanting to understand treatment options and future directions. It highlights therapies beyond...

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3 Self-Propelling WONanomotors Restore the Gut-Kidney Axis by Modulating Intestinal Homeostasis in Inflammatory Bowel Disease.
Advanced healthcare materials

3 Self-Propelling WONanomotors Restore the Gut-Kidney Axis by Modulating Intestinal Homeostasis in Inflammatory Bowel Disease.

This study describes a novel nanoparticle "nanomachine" approach aimed at fixing gut microbial and barrier dysfunction in IBD models and, by doing so, reducing secondary kidney injury—an intersection (gut–kidney axis)...

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Gut microbiota-derived metabolites target C5AR1/KDM2A/HCAR3 axis in inflammatory bowel disease: a multi-machine learning algorithms and molecular docking study
Frontiers in Cellular and Infection Microbiology

Gut microbiota-derived metabolites target C5AR1/KDM2A/HCAR3 axis in inflammatory bowel disease: a multi-machine learning algorithms and molecular docking study

The study proposes new biomarker candidates (C5AR1, KDM2A, HCAR3) and microbiota-derived metabolites that might interact with those targets. If validated, that could guide future diagnostic tests or microbiome-targeted...

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Prediction of Dietary Intervention Efficacy in Mild Ulcerative Colitis Patients Based on Fecal Microbiome Signatures
ClinicalTrials.gov

Prediction of Dietary Intervention Efficacy in Mild Ulcerative Colitis Patients Based on Fecal Microbiome Signatures

Researchers are testing whether baseline fecal microbiome profiles can predict who with mild ulcerative colitis will benefit from a specific prebiotic supplement. If validated, this approach could move dietary therapy...

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Sodium acetate attenuates ulcerative colitis by reducing intestinal epithelial apoptosis and remodeling gut microbiota
Frontiers in Microbiology

Sodium acetate attenuates ulcerative colitis by reducing intestinal epithelial apoptosis and remodeling gut microbiota

The study suggests acetate (sodium acetate) can protect intestinal cells and reshape the gut microbiota in preclinical models of ulcerative colitis, pointing to a potential microbiome-linked therapeutic avenue that might...

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Dietary tryptophan ameliorates metalaxyl-induced colitis by restoring microbial tryptophan metabolism and aryl hydrocarbon receptor activation
Frontiers in Nutrition

Dietary tryptophan ameliorates metalaxyl-induced colitis by restoring microbial tryptophan metabolism and aryl hydrocarbon receptor activation

This study suggests an environmental fungicide can disrupt gut microbes and reduce beneficial microbial tryptophan metabolites, promoting colitis in mice; dietary tryptophan reversed those effects in the model.

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Biomaterial-Based Microbiota Strategies for Targeting the Intestinal Immune Microenvironment in Inflammatory Bowel Disease.
European journal of pharmacology

Biomaterial-Based Microbiota Strategies for Targeting the Intestinal Immune Microenvironment in Inflammatory Bowel Disease.

Microbiota-targeting treatments are an active area of IBD research, and biomaterials may help overcome delivery challenges that limit current microbiome therapies. Advances here could improve how well these approaches...

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Adaptive graph learning of microbial phylogeny enables accurate and interpretable microbiome-based host phenotype prediction.
Applied and environmental microbiology

Adaptive graph learning of microbial phylogeny enables accurate and interpretable microbiome-based host phenotype prediction.

The study introduces a phylogeny-aware AI method that may improve detection and interpretation of microbiome signatures linked to IBD and colorectal cancer, which could help research into microbial biomarkers relevant to...

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A modern toolbox to elucidate the role of the human microbiome in modulating mycobacterial gut infections
Open Biology

A modern toolbox to elucidate the role of the human microbiome in modulating mycobacterial gut infections

The review outlines new research tools for investigating whether mycobacteria contribute to Crohn’s disease and how the microbiome might influence infection and intestinal inflammation, which could eventually inform...

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Cold-Induced Elevation of 3-Hydroxypropionate Exacerbates Colitis by Remodeling Gut Microbiota and Impairing Mitochondrial Respiration in Intestinal Epithelial Cells
Metabolites

Cold-Induced Elevation of 3-Hydroxypropionate Exacerbates Colitis by Remodeling Gut Microbiota and Impairing Mitochondrial Respiration in Intestinal Epithelial Cells

The study suggests a specific microbial metabolite, 3‑HPA, can link cold exposure to worse colitis by changing the microbiome and harming epithelial cell mitochondria and barrier function — a possible new mechanistic...

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Chronotherapy in Inflammatory Bowel Disease: Biological Rationale, Human Evidence, and a Clinical Implementation Framework.
Digestive diseases and sciences

Chronotherapy in Inflammatory Bowel Disease: Biological Rationale, Human Evidence, and a Clinical Implementation Framework.

Timing of therapies and daily behaviors may affect drug metabolism, immune activity, and symptom patterns in IBD. Considering when treatments are given could potentially improve response, reduce toxicity, and help...

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Ultrasound-Activated Janus Heterojunction-Mediated Enhanced Cascade Nanozyme for Inflammatory Bowel Disease Therapy.
ACS applied materials & interfaces

Ultrasound-Activated Janus Heterojunction-Mediated Enhanced Cascade Nanozyme for Inflammatory Bowel Disease Therapy.

The study describes a new ultrasound-activated nanozyme that reduced intestinal inflammation and promoted mucosal repair in preclinical IBD models by scavenging ROS and modulating the gut microbiota—an approach that...

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Sialidase inhibitor modulates gut microbiota and enhances mucosal protection in the treatment of ulcerative colitis
mSystems

Sialidase inhibitor modulates gut microbiota and enhances mucosal protection in the treatment of ulcerative colitis

The study suggests a targeted microbiome-based drug (sialidase inhibitor) may protect the mucus barrier and improve symptoms in ulcerative colitis without the broad disruption caused by antibiotics, which could be...

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Inflammation-driven carcinogenesis in ulcerative colitis: Molecular and immunological pathways
World Journal of Gastrointestinal Oncology

Inflammation-driven carcinogenesis in ulcerative colitis: Molecular and immunological pathways

People with ulcerative colitis face a higher colorectal cancer risk driven in part by chronic inflammation; this review explains the molecular and immune mechanisms behind that risk and highlights biomarkers and...

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Experimental models of spondyloarthritis: Pathophysiological insights and translational challenges.
Journal of autoimmunity

Experimental models of spondyloarthritis: Pathophysiological insights and translational challenges.

The review connects animal-model discoveries (IL-23/IL-17 and TNF pathways, gut–joint interactions) to therapies and research priorities relevant to people with SpA and IBD-associated arthritis.

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Fabrication of Microcrystalline Cellulose/ZnO Quantum Dots with Enhanced Zinc Bioavailability for Alleviating DSS-Induced Ulcerative Colitis in Mice
ACS Applied Materials & Interfaces

Fabrication of Microcrystalline Cellulose/ZnO Quantum Dots with Enhanced Zinc Bioavailability for Alleviating DSS-Induced Ulcerative Colitis in Mice

The paper reports a materials-based strategy to improve zinc delivery and bioavailability that reduced dose while preserving beneficial effects in a mouse colitis model—relevant because zinc supports intestinal health...

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