Research topics

Genetics and genomics

Genetics and genomics articles covering inherited risk, gene expression, disease pathways, and IBD research that connects genes to Crohn's disease, ulcerative colitis, or broader IBD.

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Bacterial Metatranscriptomics from Human Tissues to Resolve Contributions of Host and Microbial Pathways to Health and Disease
NIH RePORTER

Bacterial Metatranscriptomics from Human Tissues to Resolve Contributions of Host and Microbial Pathways to Health and Disease

The project aims to enable simultaneous RNA-level profiling of microbes and host cells from human biopsies, which could reveal early microbial and host gene-expression patterns linked to subclinical Crohn’s disease and...

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Serum leucine-rich α-2-glycoprotein and monocyte chemoattractant protein-1 as novel biomarkers for predicting vedolizumab response in patients with ulcerative colitis.
Crohn's & colitis 360

Serum leucine-rich α-2-glycoprotein and monocyte chemoattractant protein-1 as novel biomarkers for predicting vedolizumab response in patients with ulcerative colitis.

Blood biomarkers that predict vedolizumab response could help patients and clinicians choose the most effective therapy sooner and avoid ineffective treatments. The study suggests LRG and MCP‑1 may differentiate...

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An inflammatory bowel disease-linked lncRNA suppresses transcription factor T-BET expression in T cells to limit intestinal inflammation.
Immunity

An inflammatory bowel disease-linked lncRNA suppresses transcription factor T-BET expression in T cells to limit intestinal inflammation.

People with IBD may care because this study connects a genetic risk region to a molecular mechanism that restrains inflammation in T cells, offering a potential new biological clue about disease causes and future...

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Association of the ITGA4 rs1143674 polymorphism with subclinical atherosclerosis in patients with ulcerative colitis over 40 years of age
Almanac of Clinical Medicine

Association of the ITGA4 rs1143674 polymorphism with subclinical atherosclerosis in patients with ulcerative colitis over 40 years of age

People with UC face higher cardiovascular risk; this study links a specific ITGA4 genetic variant (rs1143674 CC) with subclinical atherosclerosis in UC patients over 40, which could help identify higher-risk individuals...

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LIMK1 and PKM as Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.
Omics : a journal of integrative biology

LIMK1 and PKM as Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.

The study proposes two transcriptomic markers (LIMK1, PKM) that may help characterize an IBD-associated, mitochondria–ER membrane–related transcriptional state and could guide future biomarker or mechanistic research.

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Apoptosis-related genes bridge inflammatory bowel disease and osteoporosis: A bioinformatic analysis.
PloS one

Apoptosis-related genes bridge inflammatory bowel disease and osteoporosis: A bioinformatic analysis.

IBD patients face higher risk of osteoporosis; identifying shared, apoptosis-related genes may help explain why and point to future biomarkers or therapeutic targets. The study links specific genes (WNT1, S100A8) to both...

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LIMK1 PKM andas Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.
Omics : a journal of integrative biology

LIMK1 PKM andas Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.

Identifies candidate gene signatures tied to MAM-related transcriptional states in IBD that could become biomarkers or guide mechanistic research into immune–metabolic pathways relevant to disease.

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Integrated Transcriptomic and Machine-Learning Analyses Identify Shared Na+ Overload-Related Gene Signatures in Inflammatory Bowel Disease and Ankylosing Spondylitis
Genes

Integrated Transcriptomic and Machine-Learning Analyses Identify Shared Na+ Overload-Related Gene Signatures in Inflammatory Bowel Disease and Ankylosing Spondylitis

The study links shared gene-expression patterns between IBD and ankylosing spondylitis and highlights STAT3 as a potential shared biomarker or therapeutic target, which could be relevant for understanding overlapping...

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Integrated multi-omics analysis reveals common genetic architecture between ulcerative colitis and psoriasis.
Human immunology

Integrated multi-omics analysis reveals common genetic architecture between ulcerative colitis and psoriasis.

The study identifies shared genetic signals and cell types (especially T cells) between ulcerative colitis and psoriasis, which could help explain their clinical co-occurrence and suggest pathways for future research or...

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Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson’s Disease: Transcriptomic Screening and In Vivo Validation
International Journal of Molecular Sciences

Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson’s Disease: Transcriptomic Screening and In Vivo Validation

This study links blood gene signatures shared between Parkinson’s disease and intestinal inflammation to astrocyte-associated molecular changes in the brain, identifying HSP90AA1 as a candidate stress-responsive hub.

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Dietary Beliefs, Genetic Risk Perceptions, and Preventive Dietary Practices Among Unaffected First-Degree Relatives of Individuals with Inflammatory Bowel Disease: A Mixed Methods Study in Greece
Europe PMC

Dietary Beliefs, Genetic Risk Perceptions, and Preventive Dietary Practices Among Unaffected First-Degree Relatives of Individuals with Inflammatory Bowel Disease: A Mixed Methods Study in Greece

First‑degree relatives of people with IBD may worry about their own risk and consider diet as a way to reduce that risk. The study suggests how beliefs about genetics and diet influence whether relatives make preventive...

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C2 Integrative Analysis of Intestinal Transcriptomes UnderscoresUpregulation in IBD, AIG, EoE, and CRC.
Bioinformatics and biology insights

C2 Integrative Analysis of Intestinal Transcriptomes UnderscoresUpregulation in IBD, AIG, EoE, and CRC.

Researchers and clinicians looking for blood- or tissue-based molecular tests for IBD may find these integrated transcriptomic analyses useful because they identify candidate diagnostic biomarkers and highlight shared...

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Exome analysis of Indian ulcerative colitis reveals novel genes affecting epithelial integrity, DNA repair, trafficking, and immune signalling
Human Genomics

Exome analysis of Indian ulcerative colitis reveals novel genes affecting epithelial integrity, DNA repair, trafficking, and immune signalling

This study expands knowledge of UC genetics in an understudied Indian population and points to genes and pathways that could help explain disease mechanisms different from those identified in Western cohorts. That could...

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CLDN8 and ABCA12 define a shared molecular signature in ulcerative colitis-psoriasis comorbidity
Frontiers in Immunology

CLDN8 and ABCA12 define a shared molecular signature in ulcerative colitis-psoriasis comorbidity

Finding shared genes (CLDN8, ABCA12) suggests common inflammatory mechanisms between ulcerative colitis and psoriasis, which could inform future biomarkers or therapies relevant to patients with either or both...

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Epithelial regulatory networks link non-coding genetic variation to clinical heterogeneity in ulcerative colitis

The study links patient-specific non-coding genetic variation to epithelial regulatory networks and to differences in disease severity and response in a large UC trial, suggesting genetics could help explain why some...

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Intestinal epithelial SETD2 maintains gut microbial homeostasis to attenuate colitis.
Clinical and translational medicine

Intestinal epithelial SETD2 maintains gut microbial homeostasis to attenuate colitis.

Epigenetic control of intestinal epithelial cells can shape gut microbes and influence colitis severity; understanding SETD2’s role could point to new mechanistic targets for IBD research and microbiome-directed...

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The causal association between inflammatory bowel disease and pancreatitis: A 2-sample Mendelian randomization study.
Medicine

The causal association between inflammatory bowel disease and pancreatitis: A 2-sample Mendelian randomization study.

If true, a causal link between IBD and pancreatitis could help explain why people with Crohn’s disease or ulcerative colitis sometimes develop acute or chronic pancreatitis and could guide research into shared biological...

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Polygenic Risk Scores Show Distinct Genetic Architectures of IBD-Associated Comorbidities.
Digestive diseases and sciences

Polygenic Risk Scores Show Distinct Genetic Architectures of IBD-Associated Comorbidities.

Shows which IBD comorbidities may be driven in part by shared inherited genetic risk and which likely reflect non-genetic factors, information that could shape future risk stratification and screening approaches for...

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HIL1 Debaryomyces hansenii The role ofin strain-level adhesion and immune recognition in.
mBio

HIL1 Debaryomyces hansenii The role ofin strain-level adhesion and immune recognition in.

The work links fungal strain variation to differences in adhesion and immune recognition, which could help explain why a normally food-associated yeast is found in Crohn disease ulcers and point to microbial features...

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Bayesian Network Analysis Identifies PREX1 as a Master Regulator of Cytoskeletal Disruption in Inflammatory Bowel Disease
Europe PMC

Bayesian Network Analysis Identifies PREX1 as a Master Regulator of Cytoskeletal Disruption in Inflammatory Bowel Disease

This study proposes a specific gene (PREX1) and related cytoskeletal pathways that may help explain epithelial brush-border and microvillus damage seen in IBD. Understanding these mechanisms could eventually inform new...

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Single-nuclei multiome-seq and modeling of intestinal cell types nominates regulatory mechanisms driving IBD genetic risk and anti-TNF nonresponse 2309915
The Journal of Immunology

Single-nuclei multiome-seq and modeling of intestinal cell types nominates regulatory mechanisms driving IBD genetic risk and anti-TNF nonresponse 2309915

People with IBD (including those on TNF inhibitors) may benefit from research that explains why some patients don’t respond to anti-TNF drugs and that points to new biologic targets. Understanding cell types and...

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Environment shapes gut microbiome and determines susceptibility to DSS-colitis in Adamdec1-/- mice
Frontiers in Immunology

Environment shapes gut microbiome and determines susceptibility to DSS-colitis in Adamdec1-/- mice

The paper highlights how the gut microbiome and environment can strongly influence colitis severity in genetically susceptible mice, illustrating a gene–environment–microbiome axis that may help explain heterogeneity in...

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Investigating causal associations between inflammatory bowel disease and IgA vasculitis: Univariable and multivariable Mendelian randomization study.
Medicine

Investigating causal associations between inflammatory bowel disease and IgA vasculitis: Univariable and multivariable Mendelian randomization study.

The analysis suggests genetic liability to IBD, particularly Crohn’s disease, may raise the risk of IgA vasculitis. This is relevant for understanding overlapping immune mechanisms and possible shared pathways between...

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Very early onset inflammatory bowel disease in Jordan: a single-center case series of clinical, genetic, and therapeutic features
BMC Pediatrics

Very early onset inflammatory bowel disease in Jordan: a single-center case series of clinical, genetic, and therapeutic features

VEOIBD often has a strong genetic component and different clinical needs than adult IBD; this study shows genetic findings and treatment challenges in a Middle East pediatric center, which may affect diagnosis and access...

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The genetic landscape of congenital diarrheas and very early onset inflammatory bowel disease in the Middle East.
JPGN reports

The genetic landscape of congenital diarrheas and very early onset inflammatory bowel disease in the Middle East.

Finding monogenic causes in infants with congenital diarrheas or VEOIBD can directly affect diagnosis, genetic counseling, and management. Populations with higher consanguinity may have higher diagnostic yields for...

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FUT2-mediated α1,2-fucosylation in inflammatory bowel disease: mechanisms and translational potential
Molecular Biology Reports

FUT2-mediated α1,2-fucosylation in inflammatory bowel disease: mechanisms and translational potential

FUT2-mediated fucosylation shapes gut glycans and the microbiome, mechanisms relevant to inflammation and mucosal barrier function in IBD. Understanding these pathways could point to future biomarkers or therapeutic...

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Spatial genetic mapping links shared inflammatory bowel disease liability to adult immune-epithelial lesion contexts.
Frontiers in immunology

Spatial genetic mapping links shared inflammatory bowel disease liability to adult immune-epithelial lesion contexts.

Links between IBD genetic risk and specific adult tissue lesion contexts help researchers understand which cell types and tissue programs may mediate inherited susceptibility. That can guide future biomarker and...

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