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Microbiome

Microbiome articles covering gut bacteria, microbial changes, microbiota research, and IBD disease mechanisms.

Page 6 of 12 · 570 articles

Protease-serpin-microbiome interactions in inflammatory bowel disease: toward integrated biomarkers of gut health.
Gut microbes

Protease-serpin-microbiome interactions in inflammatory bowel disease: toward integrated biomarkers of gut health.

Protease and serpin activity affect the gut barrier, immunity, and microbial ecology—processes central to IBD. Integrating these pathways could help identify biomarkers or targets that explain why IBD varies between...

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Preventive Effects of Fermented Yak Milk-Derived Lacticaseibacillus paracasei CD12-1 Against DSS-Induced Colitis in Mice
Foods

Preventive Effects of Fermented Yak Milk-Derived Lacticaseibacillus paracasei CD12-1 Against DSS-Induced Colitis in Mice

Preclinical results suggest a fermented yak milk–derived probiotic strain may protect against colitis in mice by improving barrier function, lowering inflammatory cytokines, and changing the gut microbiome—mechanisms...

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Bacillus Probiotic Spores in Supporting the Treatment of Chronic Inflammatory Bowel Disease
ClinicalTrials.gov

Bacillus Probiotic Spores in Supporting the Treatment of Chronic Inflammatory Bowel Disease

Patients and clinicians often seek adjunctive options to improve symptoms, quality of life, or reduce treatment burden. This trial tests whether Bacillus spore probiotics added to standard care can provide measurable...

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Accurately Profiling the Changes and Functions of Key Microflora in the Whole Intestinal Microenvironment Based on the Visual Sampling Capsule Endoscopy in Patients With Inflammatory Bowel Disease
ClinicalTrials.gov

Accurately Profiling the Changes and Functions of Key Microflora in the Whole Intestinal Microenvironment Based on the Visual Sampling Capsule Endoscopy in Patients With Inflammatory Bowel Disease

Mapping microbes and metabolites directly from different gut regions could reveal location-specific changes linked to IBD activity and help researchers develop better biomarkers or targeted treatments.

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Microbiome-Derived Tryptophan Metabolites Regulate AhR Signaling to Restore Epithelial Barrier Integrity in Inflammatory Bowel Disease.
MicrobiologyOpen

Microbiome-Derived Tryptophan Metabolites Regulate AhR Signaling to Restore Epithelial Barrier Integrity in Inflammatory Bowel Disease.

Microbial tryptophan metabolites may help restore the intestinal barrier via AhR signaling, a process that could reduce inflammation and symptom-driving permeability in IBD. Understanding this pathway could point to...

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Genetic and Epidemiologic Studies on Crohn’s Disease in Patients from Djibouti: Relationship Between CARD15/NOD2 Gene Mutations and Clinical/Demographic Factors
Europe PMC

Genetic and Epidemiologic Studies on Crohn’s Disease in Patients from Djibouti: Relationship Between CARD15/NOD2 Gene Mutations and Clinical/Demographic Factors

This study explores genetic risk variants (NOD2/CARD15) and local environmental factors (khat use) among young adults with IBD in Djibouti — information that may help explain regional differences in Crohn’s disease and...

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A genome catalog reveals the global landscape of the human gut archaeome and its relevance to inflammatory bowel disease
Europe PMC

A genome catalog reveals the global landscape of the human gut archaeome and its relevance to inflammatory bowel disease

The study expands the map of gut archaea and identifies archaeal species associated with IBD/UC, suggesting new microbial biomarkers and potential microbe–microbe interactions that might influence inflammation.

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Probiotics Accelerate Microbiota and Metabolic Pathway Recovery Following Colonoscopy Bowel Preparation in Ulcerative Colitis.
Medical science monitor : international medical journal of experimental and clinical research

Probiotics Accelerate Microbiota and Metabolic Pathway Recovery Following Colonoscopy Bowel Preparation in Ulcerative Colitis.

People with UC have lower baseline gut microbial diversity and slower recovery after PEG bowel preparation; improving recovery of beneficial microbes could matter for symptom stability and gut health. This study suggests...

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Trichinella spiralis infection-induced ursodeoxycholic acid ameliorates colitis by regulating dendritic cells and macrophages via NLRP3 inflammasome signaling pathway
Springer Science and Business Media LLC

Trichinella spiralis infection-induced ursodeoxycholic acid ameliorates colitis by regulating dendritic cells and macrophages via NLRP3 inflammasome signaling pathway

This preclinical study suggests that a specific gut microbe (Bacteroides acidifaciens) and the bile acid UDCA can reduce inflammation in a mouse colitis model by improving barrier function and dampening NLRP3-driven...

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Microbiome Therapies in Inflammatory Bowel Disease, Diabetes and Obesity: From Mechanistic Insights to Clinical Translation.
Cardiovascular & hematological agents in medicinal chemistry

Microbiome Therapies in Inflammatory Bowel Disease, Diabetes and Obesity: From Mechanistic Insights to Clinical Translation.

Microbiome-based treatments target inflammation and microbial balance — central issues in IBD — and could offer new therapeutic options. This review collates clinical and mechanistic evidence but warns that results are...

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Inflammatory and Immune Pathways Driving Tumor Necrosis Factor Inhibitor Resistance in Ulcerative Colitis.
Journal of inflammation research

Inflammatory and Immune Pathways Driving Tumor Necrosis Factor Inhibitor Resistance in Ulcerative Colitis.

If you or someone you care for is not responding to anti‑TNF drugs for ulcerative colitis, this review explains biological reasons why that may happen and points toward research directions that could lead to better tests...

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Traditional Chinese Medicine-Derived Carbon Dots Nanozymes for Treating Inflammatory Bowel Disease : Current Challenges and Future Perspectives
European Cells and Materials

Traditional Chinese Medicine-Derived Carbon Dots Nanozymes for Treating Inflammatory Bowel Disease : Current Challenges and Future Perspectives

The review presents an emerging nanotechnology (TCM-derived carbon-dot nanozymes) that could offer new multitarget anti-inflammatory and antioxidant approaches for IBD, addressing limitations of current therapies and...

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Patient-derived intestinal organoids in pediatric inflammatory bowel disease: applications in disease modeling and therapeutic response prediction
Korean Journal of Pediatrics

Patient-derived intestinal organoids in pediatric inflammatory bowel disease: applications in disease modeling and therapeutic response prediction

Patient-derived intestinal organoids offer a human-relevant platform that could improve understanding of pediatric IBD biology and help predict individual treatment responses — potentially reducing trial-and-error...

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Lactiplantibacillus plantarum as a multifunctional probiotic for inflammatory bowel disease: Mechanisms, synbiotic strategies, and delivery systems.
Synthetic and systems biotechnology

Lactiplantibacillus plantarum as a multifunctional probiotic for inflammatory bowel disease: Mechanisms, synbiotic strategies, and delivery systems.

This review highlights probiotic and synbiotic approaches centered on L. plantarum that aim to rebalance gut microbiota and support the intestinal barrier—areas of direct interest to people with IBD seeking adjunctive,...

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Gut Microbiota and Metabolic Pathway Signatures for Inflammatory Bowel Disease Identified via Subject-Stratified Random Forest Based on the Longitudinal HMP2 Cohort
Genes

Gut Microbiota and Metabolic Pathway Signatures for Inflammatory Bowel Disease Identified via Subject-Stratified Random Forest Based on the Longitudinal HMP2 Cohort

The study provides a more rigorous, leakage-free machine-learning analysis of a major IBD microbiome cohort and proposes reproducible microbial and metabolic pathway candidates that could eventually help IBD diagnosis or...

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Preparation and chemical characterization of polyphenol-rich extract from Tsaoko Fructus: alleviation of ulcerative colitis in mice by modulating gut microbiota and suppressing the JNK1-cJun signaling.
Phytomedicine : international journal of phytotherapy and phytopharmacology

Preparation and chemical characterization of polyphenol-rich extract from Tsaoko Fructus: alleviation of ulcerative colitis in mice by modulating gut microbiota and suppressing the JNK1-cJun signaling.

Researchers are exploring plant-derived polyphenols as potential anti-inflammatory agents for IBD. This preclinical study suggests a Tsaoko Fructus extract reduced colitis in mice, altered the gut microbiome toward...

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Supernatants of Water Extraction–Ethanol Precipitation from Roots of Rosa davurica Pall. Ameliorate Ulcerative Colitis in Mice: From Gut Microbes to Metabolites
Pharmaceuticals

Supernatants of Water Extraction–Ethanol Precipitation from Roots of Rosa davurica Pall. Ameliorate Ulcerative Colitis in Mice: From Gut Microbes to Metabolites

Preclinical work identified a plant-root extract fraction that reduced inflammation and improved some gut-barrier and microbiome features in a mouse model of ulcerative colitis, which could guide future research into new...

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Polysaccharide-functionalized metal-polyphenol network-coated porous microspheres for improving the treatment of probiotics in ulcerative colitis.
International journal of pharmaceutics

Polysaccharide-functionalized metal-polyphenol network-coated porous microspheres for improving the treatment of probiotics in ulcerative colitis.

Improving oral delivery and colon targeting of probiotics could make probiotic therapies more effective for ulcerative colitis by increasing survival through the gut and retention at inflamed sites. If translated to...

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Fatty acid-binding protein 2 in inflammatory bowel disease: mechanistic insights and translational perspectives.
Frontiers in medicine

Fatty acid-binding protein 2 in inflammatory bowel disease: mechanistic insights and translational perspectives.

FABP2 is presented as a sensitive biomarker of intestinal mucosal injury and a possible contributor to IBD mechanisms; if validated, it could improve disease monitoring and suggest new therapeutic targets.

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Management of Arthritis Associated with Inflammatory Bowel Disease (IBD): A Systematic Review of Conventional and Targeted Therapies
International Journal of Health and Pharmaceutical (IJHP)

Management of Arthritis Associated with Inflammatory Bowel Disease (IBD): A Systematic Review of Conventional and Targeted Therapies

Arthritis is a common and meaningful extraintestinal problem for people with IBD; understanding diagnosis and treatment options can help patients and clinicians seek appropriate multidisciplinary care.

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Batatasin III alleviates inflammatory bowel disease by suppressing MMP7 and NFκB signaling in macrophages and restoring gut microbial balance
Scientific Reports

Batatasin III alleviates inflammatory bowel disease by suppressing MMP7 and NFκB signaling in macrophages and restoring gut microbial balance

The study identifies a new compound that reduced colitis severity in mice by acting on macrophage NF-κB signaling, lowering MMP7, improving epithelial barrier markers, and altering the gut microbiome — mechanisms...

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Interaction between Chinese olive (Canarium album L.) polyphenols and gut microbiota: Potential implications for inflammatory bowel disease.
Journal of the science of food and agriculture

Interaction between Chinese olive (Canarium album L.) polyphenols and gut microbiota: Potential implications for inflammatory bowel disease.

The study suggests that polyphenols can change gut bacteria and metabolite production differently in people with IBD versus healthy controls, which could matter for designing personalized dietary interventions.

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Integrated microbiome and metabolomics analysis of the mechanism of inflammation-reducing effects of cyanidin-3-glucoside and blueberry pectin complexes in mice with ulcerative colitis.
International journal of biological macromolecules

Integrated microbiome and metabolomics analysis of the mechanism of inflammation-reducing effects of cyanidin-3-glucoside and blueberry pectin complexes in mice with ulcerative colitis.

This mouse study suggests a blueberry-derived anthocyanin plus pectin complex can alter gut microbes and metabolites linked to inflammation, pointing to a dietary approach that might influence ulcerative colitis biology.

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Extracellular vesicles in inflammatory bowel disease: from immune regulation and barrier repair to precise transformation.
Autoimmunity reviews

Extracellular vesicles in inflammatory bowel disease: from immune regulation and barrier repair to precise transformation.

The review summarizes how extracellular vesicles (EVs) shape immune responses and barrier repair in the gut and discusses their potential as accessible biomarkers and as vehicles for precise IBD therapies — topics that...

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Pectin and Kaolin as Adjunctive Metabolic Therapy for Maintaining Remission in Ulcerative Colitis: Biological Rationale, Current Evidence and Future Clinical Perspectives
Nutrients

Pectin and Kaolin as Adjunctive Metabolic Therapy for Maintaining Remission in Ulcerative Colitis: Biological Rationale, Current Evidence and Future Clinical Perspectives

The review proposes a low-cost, non-immunosuppressive adjunctive strategy targeting the gut microbiome and luminal metabolism to help maintain remission in UC, an area of strong patient interest but limited clinical...

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Synergy effects of Ganoderic acid A and Ganoderma lucidum polysaccharides on enhancing protection against DSS-induced colitis via gut microbiota rebalancing and inflammation suppression
Food Science and Human Wellness

Synergy effects of Ganoderic acid A and Ganoderma lucidum polysaccharides on enhancing protection against DSS-induced colitis via gut microbiota rebalancing and inflammation suppression

Researchers are exploring natural compounds that might reduce intestinal inflammation and rebalance the gut microbiome. If translatable to humans, such approaches could inform new treatments or adjunctive therapies for...

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Extracts of Chrysanthemum morifolium Ramat. alleviated colitis-induced cognitive dysfunction through the BDNF/TrkB/CREB signaling pathway
Journal of Functional Foods

Extracts of Chrysanthemum morifolium Ramat. alleviated colitis-induced cognitive dysfunction through the BDNF/TrkB/CREB signaling pathway

IBD can cause cognitive and neurological symptoms. This preclinical study suggests a flavonoid-rich Chrysanthemum extract reduced colitis and related cognitive deficits in mice by changing the gut microbiota and...

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The regulatory role of post-translational modifications in the pathogenesis of ulcerative colitis
Molecular Biology Reports

The regulatory role of post-translational modifications in the pathogenesis of ulcerative colitis

Understanding PTMs may help researchers identify new biomarkers or therapeutic targets for ulcerative colitis, which could eventually lead to better treatments or tests. For people with UC, this explains part of why...

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Oral Nanomicelle‐Mediated Sequential Butyrate Production in the Intestine for Ulcerative Colitis and Immunosuppression Treatment
Advanced Science

Oral Nanomicelle‐Mediated Sequential Butyrate Production in the Intestine for Ulcerative Colitis and Immunosuppression Treatment

Butyrate supports intestinal health and is often low in IBD. A single oral compound that reliably restores luminal butyrate could — if proven safe and effective in humans — offer a new way to treat ulcerative colitis or...

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The Gut Mycobiome in Inflammatory Bowel Disease: Reframing Candida as a Signal of Ecosystem Disruption.
Journal of fungi (Basel, Switzerland)

The Gut Mycobiome in Inflammatory Bowel Disease: Reframing Candida as a Signal of Ecosystem Disruption.

Researchers and clinicians are exploring fungi’s role in IBD beyond bacteria. For patients, seeing Candida in stool tests is usually a signal of microbiome disruption rather than proof of fungal infection that requires...

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Integrated Multi-Omics Analysis of Antarctic Krill Oil in Alleviating DSS-Induced Colitis and Modulating Gut Microbiota in Mice.
Marine drugs

Integrated Multi-Omics Analysis of Antarctic Krill Oil in Alleviating DSS-Induced Colitis and Modulating Gut Microbiota in Mice.

This preclinical study suggests Antarctic krill oil may reduce inflammation and alter the gut microbiome in a mouse model of ulcerative colitis, which could point toward microbiota-targeted nutritional strategies worth...

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Cadmium exposure elevates gut microbial oleic acid and promoted colitis potentially via FFAR4: A network toxicology and molecule docking study.
Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association

Cadmium exposure elevates gut microbial oleic acid and promoted colitis potentially via FFAR4: A network toxicology and molecule docking study.

Environmental cadmium exposure may alter the gut microbiome’s metabolites (oleic acid) and worsen colitis in mice via FFAR4-linked inflammatory pathways. If similar mechanisms operate in people, this could point to new...

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An atlas of colonization factors in the human gut microbiome reveals ecological strategies and inflammatory bowel disease signatures
Nature Communications

An atlas of colonization factors in the human gut microbiome reveals ecological strategies and inflammatory bowel disease signatures

This study identifies conserved, gut-enriched genes (colonization factors) and shows their repertoires are remodeled in IBD, highlighting functional microbiome changes that could inform future biomarkers or...

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Diet quality, gut microbiome, and inflammatory signatures in Puerto Rican adults with Crohn disease: a multidimensional analysis.
Inflammatory bowel diseases

Diet quality, gut microbiome, and inflammatory signatures in Puerto Rican adults with Crohn disease: a multidimensional analysis.

Diet quality was linked to gut microbiome features and exploratory differences in inflammatory markers and symptoms in adults with Crohn disease from Puerto Rico; understanding these links may help tailor dietary...

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Childhood exposure to a sibling with Crohn's disease alters gut microbiome and Crohn's disease susceptibility.
Gut

Childhood exposure to a sibling with Crohn's disease alters gut microbiome and Crohn's disease susceptibility.

Because having a sibling with Crohn's disease during childhood was linked to substantially higher risk of developing Crohn's later, and the study points to early-life microbiome differences and elevated faecal...

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Caulerpa peltata extract protects against Dextran sodium sulfate-induced acute ulcerative colitis via modulating Nrf2 pathway
The Science of Nature

Caulerpa peltata extract protects against Dextran sodium sulfate-induced acute ulcerative colitis via modulating Nrf2 pathway

People with IBD might be interested because the study explores a new natural-product intervention that appears to reduce colitis severity in an animal model by activating the Nrf2 antioxidant pathway — a pathway already...

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Ferroptosis in Intestinal Diseases: Molecular Mechanisms, Therapeutic Potential, and Future Perspectives.
Medicinal research reviews

Ferroptosis in Intestinal Diseases: Molecular Mechanisms, Therapeutic Potential, and Future Perspectives.

Researchers are exploring ferroptosis as a double-edged mechanism: preventing it may protect healthy gut lining in IBD, while inducing it might help treat colorectal cancer. Advances could lead to new biomarkers or...

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Plant Molecules Protect Against Inflammatory Bowel Disease by Restoring Gut Microbiota-Immune Homeostasis and Suppressing Pro-inflammatory Markers
bioRxiv

Plant Molecules Protect Against Inflammatory Bowel Disease by Restoring Gut Microbiota-Immune Homeostasis and Suppressing Pro-inflammatory Markers

The paper describes plant-derived compounds that reduced inflammation and partly corrected gut microbiome disturbances in lab and mouse models of colitis, suggesting a possible route to microbiome-targeted IBD therapies...

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Tongxie Yaofang ameliorates chronic relapsing ulcerative colitis by regulating gut microbiota and microbial metabolites.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences

Tongxie Yaofang ameliorates chronic relapsing ulcerative colitis by regulating gut microbiota and microbial metabolites.

The study suggests a traditional Chinese medicine formula can reduce disease signs in a mouse model of chronic relapsing ulcerative colitis and that its effects are mediated by changes in the gut microbiota and microbial...

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Valorization of spent black tea polyphenols as a functional coating for probiotic protection and colitis alleviation.
Food & function

Valorization of spent black tea polyphenols as a functional coating for probiotic protection and colitis alleviation.

The study reports an experimental coating that both protects a probiotic and provides antioxidant, anti-inflammatory effects in a mouse colitis model—an approach that, if validated in humans, could improve probiotic...

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Structural elucidation and structure-activity relationship of Porphyra haitanensis polysaccharide for preventing ulcerative colitis: Targeting the immune-microbiota-metabolism axis.
International journal of biological macromolecules

Structural elucidation and structure-activity relationship of Porphyra haitanensis polysaccharide for preventing ulcerative colitis: Targeting the immune-microbiota-metabolism axis.

The study suggests a natural seaweed-derived polysaccharide could modify gut bacteria and immune signaling in ways that reduced experimental colitis, which may interest people looking for microbiota-targeted dietary...

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