Research topics

Biomarkers

Biomarker research articles covering molecular signals, prediction tools, and measures used to study Crohn's disease, ulcerative colitis, or broader IBD.

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Blood Bile Acids for Inflammatory Bowel Disease Diagnosis and Disease Activity Assessment: A Metabolomics Meta-Analysis.
Journal of proteome research

Blood Bile Acids for Inflammatory Bowel Disease Diagnosis and Disease Activity Assessment: A Metabolomics Meta-Analysis.

If blood bile acid patterns are reproducibly different in IBD and track with disease activity, they could become noninvasive biomarkers to help diagnose IBD or monitor flares. That would be useful for patients and...

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Clinical features and biomarkers associated with ulcerative colitis: A systematic review and meta-analysis
World Journal of Gastroenterology

Clinical features and biomarkers associated with ulcerative colitis: A systematic review and meta-analysis

Knowing which symptoms and non-invasive biomarkers most strongly associate with UC can help patients and clinicians decide who should be prioritized for diagnostic endoscopy and for monitoring disease activity.

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Stromal ARHGEF15 Correlates With Inflammatory EMT and Stromal-Immune Crosstalk During Inflammatory Bowel Disease-To-Colorectal Cancer Progression.
Bioinformatics and biology insights

Stromal ARHGEF15 Correlates With Inflammatory EMT and Stromal-Immune Crosstalk During Inflammatory Bowel Disease-To-Colorectal Cancer Progression.

People with IBD are at higher risk for colorectal cancer; identifying stromal genes that track inflammation-driven EMT could help researchers find biomarkers or targets that explain how chronic inflammation promotes...

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REG3α is a Predictive Biomarker of Complicated Disease from Preclinical through Established Crohn's Disease.
Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association

REG3α is a Predictive Biomarker of Complicated Disease from Preclinical through Established Crohn's Disease.

A blood test (serum REG3α) may help identify people at higher risk of developing complicated Crohn's disease years before diagnosis and predict progression in established disease, which could inform monitoring or early...

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Protease-serpin-microbiome interactions in inflammatory bowel disease: toward integrated biomarkers of gut health.
Gut microbes

Protease-serpin-microbiome interactions in inflammatory bowel disease: toward integrated biomarkers of gut health.

Protease and serpin activity affect the gut barrier, immunity, and microbial ecology—processes central to IBD. Integrating these pathways could help identify biomarkers or targets that explain why IBD varies between...

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A genome catalog reveals the global landscape of the human gut archaeome and its relevance to inflammatory bowel disease
Europe PMC

A genome catalog reveals the global landscape of the human gut archaeome and its relevance to inflammatory bowel disease

The study expands the map of gut archaea and identifies archaeal species associated with IBD/UC, suggesting new microbial biomarkers and potential microbe–microbe interactions that might influence inflammation.

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Regulated cell death in autoimmune diseases: molecular mechanisms and therapeutic opportunities.
Molecular biology reports

Regulated cell death in autoimmune diseases: molecular mechanisms and therapeutic opportunities.

If you have IBD, emerging forms of regulated cell death may help explain ongoing intestinal inflammation and could become targets for future tests or treatments. This review highlights multiple RCD pathways linked to...

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Novel Therapeutic Strategies and Biomarkers in the Management of Inflammatory Bowel Disease: A Narrative Review.
Cureus

Novel Therapeutic Strategies and Biomarkers in the Management of Inflammatory Bowel Disease: A Narrative Review.

This narrative review surveys novel biomarkers and therapeutic strategies for adult IBD, topics that could affect diagnosis, monitoring, and future treatment options for people with Crohn's disease or ulcerative colitis.

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Expression Profiles, Biological Functions and Clinical Significance of Circular RNAs in Inflammatory Bowel Disease.
Journal of inflammation research

Expression Profiles, Biological Functions and Clinical Significance of Circular RNAs in Inflammatory Bowel Disease.

Researchers are investigating circRNAs as potential biomarkers and therapeutic targets in IBD because they may help explain disease mechanisms and lead to better diagnostics or treatments in the future.

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Gut Microbiota and Metabolic Pathway Signatures for Inflammatory Bowel Disease Identified via Subject-Stratified Random Forest Based on the Longitudinal HMP2 Cohort
Genes

Gut Microbiota and Metabolic Pathway Signatures for Inflammatory Bowel Disease Identified via Subject-Stratified Random Forest Based on the Longitudinal HMP2 Cohort

The study provides a more rigorous, leakage-free machine-learning analysis of a major IBD microbiome cohort and proposes reproducible microbial and metabolic pathway candidates that could eventually help IBD diagnosis or...

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The Utility of Faecal Biomarkers in the Discrimination Between Acute Gastroenteritis and Inflammatory Bowel Disease
Biomedicines

The Utility of Faecal Biomarkers in the Discrimination Between Acute Gastroenteritis and Inflammatory Bowel Disease

Distinguishing acute infectious gastroenteritis from new‑onset IBD can be clinically challenging. Faecal biomarkers that help tell these apart could speed correct diagnosis and treatment and avoid unnecessary...

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Development of a tissue-based risk prediction model combining histology and barrier biomarkers for clinical relapse in ulcerative colitis with endoscopic healing.
Therapeutic advances in gastroenterology

Development of a tissue-based risk prediction model combining histology and barrier biomarkers for clinical relapse in ulcerative colitis with endoscopic healing.

Patients with UC who appear healed on endoscopy can still relapse; a biopsy-based model could help separate lower- and higher-risk patients and guide monitoring or research enrollment.

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Fatty acid-binding protein 2 in inflammatory bowel disease: mechanistic insights and translational perspectives.
Frontiers in medicine

Fatty acid-binding protein 2 in inflammatory bowel disease: mechanistic insights and translational perspectives.

FABP2 is presented as a sensitive biomarker of intestinal mucosal injury and a possible contributor to IBD mechanisms; if validated, it could improve disease monitoring and suggest new therapeutic targets.

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Dynamic precision therapy in chronic gastrointestinal diseases: A focus on gastroesophageal reflux disease and inflammatory bowel disease-A narrative review and conceptual perspective.
Therapeutic advances in gastroenterology

Dynamic precision therapy in chronic gastrointestinal diseases: A focus on gastroesophageal reflux disease and inflammatory bowel disease-A narrative review and conceptual perspective.

The review lays out a multidimensional precision-care model that could help make IBD treatment more personalized, reduce unnecessary continuous medication, and use biomarker and technology-driven adjustments to manage...

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Computational identification and experimental validation of shared diagnostic biomarkers and gene signatures across HLA-B27-associated immune-mediated diseases
Journal of Translational Medicine

Computational identification and experimental validation of shared diagnostic biomarkers and gene signatures across HLA-B27-associated immune-mediated diseases

The work searches for shared blood-based gene signatures and biomarkers across HLA-B27–linked diseases (including Crohn’s disease and ulcerative colitis), which could point to common mechanisms or cross-disease...

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Identification of Ferro‐Aging‐Related Biomarkers for Ulcerative Colitis Through Integrated Machine Learning, Single‐Cell Analysis, and Spatial Transcriptomics
The FASEB Journal

Identification of Ferro‐Aging‐Related Biomarkers for Ulcerative Colitis Through Integrated Machine Learning, Single‐Cell Analysis, and Spatial Transcriptomics

Researchers identified molecular features of a proposed “ferro‑aging” state in UC and nominated CHST15 and MSN as biomarkers, which could help understand disease biology and point to new experimental targets for therapy...

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Extracellular vesicles in inflammatory bowel disease: from immune regulation and barrier repair to precise transformation.
Autoimmunity reviews

Extracellular vesicles in inflammatory bowel disease: from immune regulation and barrier repair to precise transformation.

The review summarizes how extracellular vesicles (EVs) shape immune responses and barrier repair in the gut and discusses their potential as accessible biomarkers and as vehicles for precise IBD therapies — topics that...

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Wearable perspiration sensor for continuous inflammation tracking in inflammatory bowel disease.
Inflammatory bowel diseases

Wearable perspiration sensor for continuous inflammation tracking in inflammatory bowel disease.

A wearable sensor that reliably measures inflammation markers (CRP and calprotectin) from sweat could make inflammation monitoring less invasive and more frequent for people with IBD, potentially helping detect flares...

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Pectin and Kaolin as Adjunctive Metabolic Therapy for Maintaining Remission in Ulcerative Colitis: Biological Rationale, Current Evidence and Future Clinical Perspectives
Nutrients

Pectin and Kaolin as Adjunctive Metabolic Therapy for Maintaining Remission in Ulcerative Colitis: Biological Rationale, Current Evidence and Future Clinical Perspectives

The review proposes a low-cost, non-immunosuppressive adjunctive strategy targeting the gut microbiome and luminal metabolism to help maintain remission in UC, an area of strong patient interest but limited clinical...

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Plasma proteomic signatures associated with ulcerative colitis risk in overweight/obesity individuals: a UK Biobank study
Scientific Reports

Plasma proteomic signatures associated with ulcerative colitis risk in overweight/obesity individuals: a UK Biobank study

If you have overweight or obesity, this study suggests measurable blood proteins linked to inflammation may be associated with higher future risk of ulcerative colitis. Identifying such markers could help research on...

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Shaping the research agenda of pediatric gastroenterology, hepatology, and nutrition: The proposal from a SIGENP expert groups
PubMed Central

Shaping the research agenda of pediatric gastroenterology, hepatology, and nutrition: The proposal from a SIGENP expert groups

A strategic, pediatric-focused research agenda helps target studies where children with IBD and related conditions most need better diagnostics, biomarkers, and treatments. Prioritizing multi-center registries and...

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Ferroptosis in Intestinal Diseases: Molecular Mechanisms, Therapeutic Potential, and Future Perspectives.
Medicinal research reviews

Ferroptosis in Intestinal Diseases: Molecular Mechanisms, Therapeutic Potential, and Future Perspectives.

Researchers are exploring ferroptosis as a double-edged mechanism: preventing it may protect healthy gut lining in IBD, while inducing it might help treat colorectal cancer. Advances could lead to new biomarkers or...

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The Roles of Four Neutrophil-Derived Proteins as Non-Invasive Biomarkers in the Assessment of Inflammatory Bowel Disease.
Journal of inflammation research

The Roles of Four Neutrophil-Derived Proteins as Non-Invasive Biomarkers in the Assessment of Inflammatory Bowel Disease.

Non-invasive biomarkers can help detect and monitor IBD activity, distinguish IBD from other GI conditions, and potentially predict relapse—tools that may reduce need for invasive tests.

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Identification and validation of novel platelet-related genes in ulcerative colitis using bioinformatics and machine learning strategies
PeerJ

Identification and validation of novel platelet-related genes in ulcerative colitis using bioinformatics and machine learning strategies

Researchers present a small platelet-related gene signature (TRIM22, TIMP1, RAC2) that may help understand UC biology and point toward blood-based biomarkers. If validated further, such markers might aid noninvasive...

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Basal crypt dysplasia in inflammatory bowel disease: morphological quandaries, p53 immunohistochemistry and diagnostic pointers
Virchows Archiv

Basal crypt dysplasia in inflammatory bowel disease: morphological quandaries, p53 immunohistochemistry and diagnostic pointers

Basal crypt dysplasia is easy to miss but linked to higher risk of advanced colorectal neoplasia in longstanding IBD. Improved recognition and use of p53 immunohistochemistry or complementary biomarkers could affect...

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TL1A-DR3 Signaling in Inflammatory Bowel Disease: From Pathogenesis to Therapeutic Targeting.
The Kurume medical journal

TL1A-DR3 Signaling in Inflammatory Bowel Disease: From Pathogenesis to Therapeutic Targeting.

TL1A-DR3 is implicated in both inflammation and fibrosis in IBD, so targeting it could address active disease and reduce fibrotic complications that lead to strictures. New TL1A-blocking antibodies are already in...

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Longitudinal visceral adipose heterogeneity supports digital health stratification of infliximab response loss in Crohn disease
Springer Science and Business Media LLC

Longitudinal visceral adipose heterogeneity supports digital health stratification of infliximab response loss in Crohn disease

If validated, an imaging-derived adipose heterogeneity biomarker could help predict who will lose response to infliximab after induction, potentially guiding earlier treatment decisions and personalized monitoring for...

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Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis
Frontiers in Immunology

Machine learning–driven identification and experimental validation of key biomarkers in the bile acid metabolic pathway associated with ulcerative colitis

The study points to three bile-acid–related genes that may be linked to inflammation in ulcerative colitis and could serve as biomarkers or targets for future research into disease mechanisms and patient stratification.

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Microbiota-Immune Interaction Landscape of Treg/Th17 Dynamic Balance in Regulating Mucosal Immune Homeostasis: From Molecular Switches to Precision Intervention in Inflammatory Bowel Disease
Discovery Medicine

Microbiota-Immune Interaction Landscape of Treg/Th17 Dynamic Balance in Regulating Mucosal Immune Homeostasis: From Molecular Switches to Precision Intervention in Inflammatory Bowel Disease

Treg/Th17 balance is a central immune mechanism implicated in IBD pathogenesis; understanding how microbes, metabolites, and tissue context control that balance could inform new biomarkers and targeted therapies.

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Pesticide Residues, Gut Microbiota, and Gastrointestinal Outcomes: A Scoping Review of Human Evidence
Comprehensive Reviews in Food Science and Food Safety

Pesticide Residues, Gut Microbiota, and Gastrointestinal Outcomes: A Scoping Review of Human Evidence

This review summarizes human evidence that pesticides in the diet could affect the gut microbiome and may be linked to gastrointestinal outcomes including IBD; strongest consistent signals were for organochlorine...

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Preventing relapse in ulcerative colitis remission maintenance: machine learning prediction and reinforcement-learning herbal prescription optimization with external validation
Frontiers in Medicine

Preventing relapse in ulcerative colitis remission maintenance: machine learning prediction and reinforcement-learning herbal prescription optimization with external validation

The work aims to predict relapse and personalize herbal maintenance dosing for UC, which matters because better risk stratification and tailored management could reduce relapses and avoid unnecessary treatment changes.

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Serum leucine-rich α-2-glycoprotein and monocyte chemoattractant protein-1 as novel biomarkers for predicting vedolizumab response in patients with ulcerative colitis.
Crohn's & colitis 360

Serum leucine-rich α-2-glycoprotein and monocyte chemoattractant protein-1 as novel biomarkers for predicting vedolizumab response in patients with ulcerative colitis.

Blood biomarkers that predict vedolizumab response could help patients and clinicians choose the most effective therapy sooner and avoid ineffective treatments. The study suggests LRG and MCP‑1 may differentiate...

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Modulating immune toxicity in ulcerative colitis using a small molecule RAB27A inhibitor
Inflammatory Bowel Diseases

Modulating immune toxicity in ulcerative colitis using a small molecule RAB27A inhibitor

The report describes a novel small-molecule inhibitor (IMYX-3) targeting RAB27A to reduce neutrophil-mediated damage in ulcerative colitis models, which could point to a new therapeutic approach if later validated in...

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Analysis of multiplexed SERS-based lateral flow assays: turning qualitative into quantitative for inflammatory bowel disease monitoring.
The Analyst

Analysis of multiplexed SERS-based lateral flow assays: turning qualitative into quantitative for inflammatory bowel disease monitoring.

Quantitative, rapid stool tests could make it easier to track intestinal inflammation without central lab delays. If translated to clinical use, SERS-enhanced lateral-flow assays might allow more frequent, point-of-care...

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