Evidence types

Basic Science

Basic science articles covering early-stage IBD research, disease mechanisms, lab findings, microbiome work, genetics, and experimental models.

Page 10 of 15 · 709 articles

Lactobacillus brevis Desulfovibrio ZFM820 modulates intestinal ecological sulfur homeostasis to alleviate-driven colitis.
Food & function

Lactobacillus brevis Desulfovibrio ZFM820 modulates intestinal ecological sulfur homeostasis to alleviate-driven colitis.

The study suggests a new microbiome-based strategy that targets toxic hydrogen sulfide production and boosts host detoxification — a mechanism potentially relevant to some forms of IBD driven by sulfur-metabolizing...

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Development of Hydrophobic Tag Based HDAC6 Degrader for Ulcerative Colitis Treatment.
Journal of medicinal chemistry

Development of Hydrophobic Tag Based HDAC6 Degrader for Ulcerative Colitis Treatment.

The study introduces a novel preclinical therapeutic approach that selectively degrades HDAC6 and reduced inflammation in a mouse model of colitis, suggesting a potential new drug-discovery avenue relevant to ulcerative...

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VIGIL: Vision-Language Guided Multiple Instance Learning Framework for Ulcerative Colitis Histological Healing Prediction.
IEEE transactions on bio-medical engineering

VIGIL: Vision-Language Guided Multiple Instance Learning Framework for Ulcerative Colitis Histological Healing Prediction.

The study presents an AI method that combines endoscopic images and diagnostic text to predict histological healing in ulcerative colitis, which could help non-invasive assessment and reduce annotation effort in...

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Molecular regulatory mechanism of TRPV4-mediated calcium-dependent 5-HT secretion from enterochromaffin cells and its involvement in ulcerative colitis
PLOS One

Molecular regulatory mechanism of TRPV4-mediated calcium-dependent 5-HT secretion from enterochromaffin cells and its involvement in ulcerative colitis

The study links a cellular signaling pathway that increases serotonin release from gut enterochromaffin cells to inflammation in a mouse model of ulcerative colitis. If confirmed, blocking TRPV4 could become a research...

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Identification of TIMP1 as a Key Regulator of Ferroptosis in Ulcerative Colitis Through Bioinformatics and Functional Experiments.
Gastroenterology research and practice

Identification of TIMP1 as a Key Regulator of Ferroptosis in Ulcerative Colitis Through Bioinformatics and Functional Experiments.

The study suggests TIMP1 may help drive ferroptosis, inflammation, and epithelial barrier dysfunction in ulcerative colitis; targeting TIMP1 could eventually inform new therapies or biomarkers if confirmed in further...

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LIMK1 and PKM as Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.
Omics : a journal of integrative biology

LIMK1 and PKM as Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.

The study proposes two transcriptomic markers (LIMK1, PKM) that may help characterize an IBD-associated, mitochondria–ER membrane–related transcriptional state and could guide future biomarker or mechanistic research.

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Periodontal ligament stem cells ameliorate experimental colitis by restoring macrophage mitochondrial homeostasis associated with PINK1/Parkin-related mitochondrial quality control.
Biochimica et biophysica acta. Molecular basis of disease

Periodontal ligament stem cells ameliorate experimental colitis by restoring macrophage mitochondrial homeostasis associated with PINK1/Parkin-related mitochondrial quality control.

This preclinical study links periodontal ligament stem cells to reduced colitis severity in mice by restoring macrophage mitochondrial function and activating PINK1/Parkin-associated mitophagy, suggesting a possible new...

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Profiling Systemic IgG-Targeted Gut Microbiota Reveals Disease Activity–Associated Bacterial Signatures in Ulcerative Colitis
MDPI AG

Profiling Systemic IgG-Targeted Gut Microbiota Reveals Disease Activity–Associated Bacterial Signatures in Ulcerative Colitis

This study suggests that specific gut bacteria targeted by systemic IgG are associated with UC activity and inflammation, which could eventually help identify microbial signals linked to flares or systemic inflammation.

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Apoptosis-related genes bridge inflammatory bowel disease and osteoporosis: A bioinformatic analysis.
PloS one

Apoptosis-related genes bridge inflammatory bowel disease and osteoporosis: A bioinformatic analysis.

IBD patients face higher risk of osteoporosis; identifying shared, apoptosis-related genes may help explain why and point to future biomarkers or therapeutic targets. The study links specific genes (WNT1, S100A8) to both...

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Epigenetic modulation of stromal cell states underpins pathological tissue niches in Crohn's disease
nature.com

Epigenetic modulation of stromal cell states underpins pathological tissue niches in Crohn's disease

The paper maps distinct stromal cell states tied to inflamed versus fibrotic tissue niches in Crohn’s disease and shows that these states have different chromatin configurations and drug-modifiable properties — pointing...

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LIMK1 PKM andas Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.
Omics : a journal of integrative biology

LIMK1 PKM andas Integratively Identified Transcriptomic Signatures in Inflammatory Bowel Disease.

Identifies candidate gene signatures tied to MAM-related transcriptional states in IBD that could become biomarkers or guide mechanistic research into immune–metabolic pathways relevant to disease.

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Azoreductase-Responsive NIR Fluorescent Self-Assembled Probe for Hypoxia Imaging of Tumors, Hindlimb Ischemia, and Ulcerative Colitis
Analytical Chemistry

Azoreductase-Responsive NIR Fluorescent Self-Assembled Probe for Hypoxia Imaging of Tumors, Hindlimb Ischemia, and Ulcerative Colitis

The probe targets azoreductase-driven hypoxia, a mechanism linked to ulcerative colitis and other hypoxia-associated diseases; a reliable real-time imaging method could help research and eventually guide treatments.

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A dysregulated stromal remodelling programme characterises prior anti-TNF failure in ulcerative colitis
openRxiv

A dysregulated stromal remodelling programme characterises prior anti-TNF failure in ulcerative colitis

The study suggests a specific stromal and MAPK/EGFR signalling programme linked to prior anti‑TNF failure in ulcerative colitis, which could help explain why some patients are less responsive to later therapies and point...

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Role of Sodium Phenylbutyrate and Suramin in the Prevention of Ulcerative Colitis Induced by Dextran Sulfate Sodium
Experimed

Role of Sodium Phenylbutyrate and Suramin in the Prevention of Ulcerative Colitis Induced by Dextran Sulfate Sodium

Preclinical data suggest sodium phenylbutyrate and suramin may reduce inflammation and oxidative stress in a mouse model of ulcerative colitis, pointing to possible therapeutic mechanisms worth further study.

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Metabolic glycoengineered exosomes enable in situ PD-L1-Fc assembly for targeted immunotherapy in ulcerative colitis
Journal of Nanobiotechnology

Metabolic glycoengineered exosomes enable in situ PD-L1-Fc assembly for targeted immunotherapy in ulcerative colitis

This study presents a targeted immunotherapy approach designed to concentrate an immune‑modulating protein (PD‑L1‑Fc) in the inflamed colon, which could in future reduce systemic side effects of biologic immunomodulators...

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Integrated Transcriptomic and Machine-Learning Analyses Identify Shared Na+ Overload-Related Gene Signatures in Inflammatory Bowel Disease and Ankylosing Spondylitis
Genes

Integrated Transcriptomic and Machine-Learning Analyses Identify Shared Na+ Overload-Related Gene Signatures in Inflammatory Bowel Disease and Ankylosing Spondylitis

The study links shared gene-expression patterns between IBD and ankylosing spondylitis and highlights STAT3 as a potential shared biomarker or therapeutic target, which could be relevant for understanding overlapping...

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TRDMT1-dependent m5C modification of TLR4 mediates the protective effects of Shaoyao decoction in TNBS-induced Crohn's disease
International Immunopharmacology

TRDMT1-dependent m5C modification of TLR4 mediates the protective effects of Shaoyao decoction in TNBS-induced Crohn's disease

Based on the title and source metadata, this appears to be a basic science related to Crohn's disease, Inflammatory bowel disease, and Research and clinical trials. The original article is from International...

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Orally administrable photo-crosslinked coumaroyl-modified gelatin-CNC nanofibers for ulcerative colitis environment-triggered release of 5-aminosalicylic acid
Journal of Nanobiotechnology

Orally administrable photo-crosslinked coumaroyl-modified gelatin-CNC nanofibers for ulcerative colitis environment-triggered release of 5-aminosalicylic acid

Targeted release of mesalamine to the colon could increase local drug levels and reduce upper-GI exposure and systemic side effects. New delivery platforms may improve effectiveness for ulcerative colitis without...

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Integrated multi-omics analysis reveals common genetic architecture between ulcerative colitis and psoriasis.
Human immunology

Integrated multi-omics analysis reveals common genetic architecture between ulcerative colitis and psoriasis.

The study identifies shared genetic signals and cell types (especially T cells) between ulcerative colitis and psoriasis, which could help explain their clinical co-occurrence and suggest pathways for future research or...

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Guchang capsule alleviates inflammatory bowel disease by downregulating lncRNA THRIL and inhibiting the p38 MAPK/NF-κB signaling pathway.
Molecular immunology

Guchang capsule alleviates inflammatory bowel disease by downregulating lncRNA THRIL and inhibiting the p38 MAPK/NF-κB signaling pathway.

The study identifies a possible molecular mechanism (THRIL downregulation and inhibition of p38 MAPK/NF-κB) by which a traditional Chinese medicine preparation reduced inflammation in mouse and cell models of colitis,...

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Surfactant-tailored alginate/pectin hydrogel beads delivering polydeoxyribonucleotide for inflammatory symptom alleviation and gut microbiota regulation.
International journal of biological macromolecules

Surfactant-tailored alginate/pectin hydrogel beads delivering polydeoxyribonucleotide for inflammatory symptom alleviation and gut microbiota regulation.

New targeted-delivery research could lead to treatments that reduce gut inflammation while also shifting the microbiome — both relevant to IBD management. However, this report is preclinical and does not mean the therapy...

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Cross-Disease Microbiome Signatures Associated with Autoimmune Disorders: A Comparative Meta-Analysis of Public Sequencing Datasets
Europe PMC

Cross-Disease Microbiome Signatures Associated with Autoimmune Disorders: A Comparative Meta-Analysis of Public Sequencing Datasets

Shared gut microbiome shifts across autoimmune diseases could suggest common microbial factors relevant to immune regulation and might eventually inform diagnostics or therapies relevant to people with IBD.

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GM-CSF regulates conserved ILC-like transcriptional states and myeloid cell signaling during ulceration in Crohns disease
bioRxiv

GM-CSF regulates conserved ILC-like transcriptional states and myeloid cell signaling during ulceration in Crohns disease

The study highlights GM‑CSF as a spatial regulator of myeloid–lymphoid interactions in ulcerated ileal tissue, which may help researchers and clinicians understand mechanisms that drive inflammation and epithelial injury...

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Systemic reprogramming of monocytes in Crohn's disease promotes their intestinal inflammatory function.
JCI insight

Systemic reprogramming of monocytes in Crohn's disease promotes their intestinal inflammatory function.

Shows that in Crohn’s disease, inflammatory changes in circulating monocytes appear before they enter the gut, which could help explain persistent intestinal macrophage dysfunction and may guide future biomarker or...

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Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson’s Disease: Transcriptomic Screening and In Vivo Validation
International Journal of Molecular Sciences

Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson’s Disease: Transcriptomic Screening and In Vivo Validation

This study links blood gene signatures shared between Parkinson’s disease and intestinal inflammation to astrocyte-associated molecular changes in the brain, identifying HSP90AA1 as a candidate stress-responsive hub.

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Bioactive Metal-Phenolic Network and Prebiotic Hydrogel Synergize with Mesenchymal stem cell-derived extracellular vesicles for Microenvironment-Modulating Therapy of Inflammatory Bowel Disease
Europe PMC

Bioactive Metal-Phenolic Network and Prebiotic Hydrogel Synergize with Mesenchymal stem cell-derived extracellular vesicles for Microenvironment-Modulating Therapy of Inflammatory Bowel Disease

The study describes a novel oral delivery system that both protects stem-cell-derived extracellular vesicles and actively modifies the gut environment, which could point to new microenvironment-targeted IBD therapies.

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Probiotic extracellular vesicles loaded with multifunctional nanozymes for inflammatory bowel disease treatment
Springer Science and Business Media LLC

Probiotic extracellular vesicles loaded with multifunctional nanozymes for inflammatory bowel disease treatment

The study explores a novel, combined nanozyme + microbiome-derived vesicle approach aimed at reducing oxidative stress and modulating inflammation in IBD — mechanisms that are relevant to disease pathways and future...

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Integrating virtual docking and neural network modeling to predict the anti-inflammatory potential of dietary polyphenols in ulcerative colitis.
Food & function

Integrating virtual docking and neural network modeling to predict the anti-inflammatory potential of dietary polyphenols in ulcerative colitis.

People with UC often seek dietary strategies to help manage inflammation; this study uses AI and docking to prioritize polyphenols and foods for future testing, which could guide research and eventually inform dietary...

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Fufang Tongye Shaoshang You repairs ulcerative colitis in mice caused by DSS based on the balanced strategy of "inflammation inhibition-microbiota regulation-mucosa protection".
Journal of ethnopharmacology

Fufang Tongye Shaoshang You repairs ulcerative colitis in mice caused by DSS based on the balanced strategy of "inflammation inhibition-microbiota regulation-mucosa protection".

People with UC may be interested because the study identifies a traditional herbal formulation that reduced disease markers in a mouse model and changed gut microbiota and inflammatory pathways (IL‑17), suggesting...

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Engineering of Artificial Antioxidase Enables Boosted Catalytic Activity in Inflammatory Bowel Disease Alleviation.
Angewandte Chemie (International ed. in English)

Engineering of Artificial Antioxidase Enables Boosted Catalytic Activity in Inflammatory Bowel Disease Alleviation.

Researchers are exploring non-drug enzyme-like catalysts to reduce oxidative stress in IBD—this study reports a new artificial antioxidase that helped reduce inflammation in cell and animal models, which could point to...

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Cod Skin Collagen Peptides Alleviate Ulcerative Colitis by Regulating Gut Microbiota to Inhibit NLRP3 Inflammasome Activation.
Food science & nutrition

Cod Skin Collagen Peptides Alleviate Ulcerative Colitis by Regulating Gut Microbiota to Inhibit NLRP3 Inflammasome Activation.

This preclinical study links cod skin–derived collagen peptides to reduced colitis severity in mice through changes in the gut microbiota and suppression of the NLRP3 inflammasome — pathways that could be relevant to...

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AnEnergy-Sustainable and Oxidative-Tolerant Nanofactoryof Therapeutic Proteins for Long-Acting Therapy of Inflammatory BowelDisease
ACS Nano

AnEnergy-Sustainable and Oxidative-Tolerant Nanofactoryof Therapeutic Proteins for Long-Acting Therapy of Inflammatory BowelDisease

Researchers are exploring ways to produce anti-inflammatory proteins directly at inflamed gut sites; this study describes a nanomaterial system intended to protect plasmid drugs and supply oxygen to sustain local protein...

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Morphometric and GLCM textural computational analysis for improved IBD diagnostics in children
Biomedical Signal Processing and Control

Morphometric and GLCM textural computational analysis for improved IBD diagnostics in children

Based on the title and source metadata, this appears to be a basic science related to Inflammatory bowel disease and Research and clinical trials. The original article is from Biomedical Signal Processing and Control.

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Two birds with one stone: Charge flip assisted colon-targeting hybrid nanoplatform for both drug delivery and proinflammatory factor scavenging.
Colloids and surfaces. B, Biointerfaces

Two birds with one stone: Charge flip assisted colon-targeting hybrid nanoplatform for both drug delivery and proinflammatory factor scavenging.

This study reports an early-stage nanoplatform that combines targeted colon delivery of an aminosalicylate prodrug with scavenging of proinflammatory cfDNA, a dual strategy that reduced colitis severity in mice and could...

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Montmorillonite@Metal oxide nanocomposites enables multitarget therapy for inflammatory bowel disease treatment.
Journal of advanced research

Montmorillonite@Metal oxide nanocomposites enables multitarget therapy for inflammatory bowel disease treatment.

This study describes a new clay-based nanotherapy that reduced inflammation and oxidative stress in a common mouse model of colitis, suggesting a potential local treatment approach that targets multiple disease...

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Ginger-derived exosome-like nanoparticles incorporated into hydrogel matrix for enhanced oral delivery of celastrol to alleviate ulcerative colitis.
International journal of pharmaceutics

Ginger-derived exosome-like nanoparticles incorporated into hydrogel matrix for enhanced oral delivery of celastrol to alleviate ulcerative colitis.

The study describes a new oral delivery system designed to improve colon targeting and anti-inflammatory activity of celastrol, which could eventually lead to better drug options for ulcerative colitis if advanced to...

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Senkyunolide I Inhibits mtDNA‐cGAS‐STING Signaling in Macrophages via Targeting VDAC1 Oligomerization to Attenuate Ulcerative Colitis
Advanced Science

Senkyunolide I Inhibits mtDNA‐cGAS‐STING Signaling in Macrophages via Targeting VDAC1 Oligomerization to Attenuate Ulcerative Colitis

The paper identifies a new mechanism (VDAC1-driven mtDNA release activating cGAS–STING) that may drive inflammation in ulcerative colitis and a candidate compound (senkyunolide I) that blocks this pathway in preclinical...

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